STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT18922Serine/arginine-rich splicing factor 3. (167 aa)    
Predicted Functional Partners:
KP79_PYT05986
Serine/arginine-rich splicing factor 2.
  
0.983
KP79_PYT14782
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.976
KP79_PYT19418
Transformer-2 protein-like alpha.
  
 0.975
KP79_PYT16555
Serine/arginine-rich splicing factor 1.
  
0.943
KP79_PYT00076
Protein mago nashi-like 2.
   
 0.939
KP79_PYT08831
Splicing regulatory glutamine/lysine-rich protein 1.
   
 0.928
KP79_PYT06469
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.928
KP79_PYT18894
Serine/arginine-rich splicing factor 7.
   
0.919
KP79_PYT18895
Serine/arginine-rich splicing factor 7.
   
0.919
KP79_PYT17288
Pre-mRNA-splicing factor SLU7.
    
 0.915
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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