STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT17948E3 ubiquitin-protein ligase; E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. (290 aa)    
Predicted Functional Partners:
KP79_PYT24421
Catenin beta.
    
 0.933
KP79_PYT09043
CS domain-containing protein.
     
  0.900
KP79_PYT21761
Ubiquitin carboxyl-terminal hydrolase.
    
 0.826
KP79_PYT11974
Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.733
KP79_PYT21544
Glyceraldehyde-3-phosphate dehydrogenase.
   
 
 0.686
KP79_PYT07321
Tyrosine--tRNA ligase.
      
 0.567
KP79_PYT15701
Ubiquitin-conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.561
KP79_PYT03298
Ubiquitin-conjugating enzyme E2 E3; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.550
KP79_PYT24363
Ubiquitin-conjugating enzyme E2-24 kDa; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.550
KP79_PYT20855
Uncharacterized protein.
      
 0.544
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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