STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kpsT_2Capsular polysaccharide transport system ATP-binding protein. (217 aa)    
Predicted Functional Partners:
kpsM
Capsular polysaccharide transport system permease protein.
 
 0.998
SEK51922.1
Capsular polysaccharide transport system permease protein.
 
 
 0.997
SEL02125.1
ABC-type polysaccharide/polyol phosphate export permease.
 
 0.996
SEK94475.1
Capsular polysaccharide transport system permease protein.
 
 
 0.991
SEK60692.1
Capsular polysaccharide export protein.
 
  
 0.954
SEK60721.1
Polysaccharide export outer membrane protein.
 
  
 0.946
SEK60740.1
Capsular polysaccharide export protein.
 
   
 0.813
SEL11497.1
Glycosyl transferase family 2.
 
    0.769
SEL11532.1
Glycosyl transferase family 2.
 
    0.766
SEK55173.1
Uncharacterised nucleotidyltransferase.
  
  
 0.732
Your Current Organism:
Pacificibacter marinus
NCBI taxonomy Id: 658057
Other names: CCUG 58403, DSM 25228, KCTC 22805, P. marinus, Pacificibacter marinus (Jung et al. 2011) Park et al. 2015, Roseovarius marinus, Roseovarius marinus Jung et al. 2011, Roseovarius sp. HDW-9, strain HDW-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.