STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL36979.1Tripartite ATP-independent transporter, DctQ component. (177 aa)    
Predicted Functional Partners:
yiaO_11
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.948
SEL37029.1
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein.
 
     0.941
SEL37089.1
Uncharacterized conserved protein YgbK, DUF1537 family.
 
     0.940
rlp2_2
Ribulose-bisphosphate carboxylase large chain; Belongs to the RuBisCO large chain family.
 
     0.925
siaT_27
TRAP transporter, DctM subunit.
 
  0.911
degA_3
Transcriptional regulator, LacI family.
 
     0.858
SEL09204.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
     0.639
SEK55085.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.530
SEL37134.1
Hypothetical protein.
       0.501
yutF_2
Ribonucleotide monophosphatase NagD, HAD superfamily.
  
     0.489
Your Current Organism:
Pacificibacter marinus
NCBI taxonomy Id: 658057
Other names: CCUG 58403, DSM 25228, KCTC 22805, P. marinus, Pacificibacter marinus (Jung et al. 2011) Park et al. 2015, Roseovarius marinus, Roseovarius marinus Jung et al. 2011, Roseovarius sp. HDW-9, strain HDW-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.