STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE52600.1Hypothetical protein. (1071 aa)    
Predicted Functional Partners:
SDE10398.1
Putative porin.
  
 
   0.800
SDE52559.1
Glycine/D-amino acid oxidase.
 
     0.789
SDE62790.1
Hypothetical protein.
  
 
   0.782
SDE67500.1
Outer membrane protein beta-barrel domain-containing protein.
  
 
   0.780
SDG85950.1
Hypothetical protein.
  
     0.761
SDH02849.1
WD40-like Beta Propeller Repeat.
  
   0.761
cmk
Cytidylate kinase.
       0.749
SDE62670.1
Hypothetical protein.
  
     0.749
SDH03841.1
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
  
    0.744
SDE05586.1
Peptidyl-prolyl cis-trans isomerase SurA.
 
 
 0.737
Your Current Organism:
Dyadobacter soli
NCBI taxonomy Id: 659014
Other names: D. soli, DSM 25329, Dyadobacter soli Lee et al. 2010, Dyadobacter sp. MJ20, JCM 16232, KCTC 22481, strain MJ20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.