STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG69950.1Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (341 aa)    
Predicted Functional Partners:
SDD71860.1
TonB-linked outer membrane protein, SusC/RagA family.
 
  0.912
SDF13913.1
TonB-dependent Receptor Plug Domain.
 
  0.912
SDG78471.1
TonB-linked outer membrane protein, SusC/RagA family.
 
  0.910
SDG38260.1
Outer membrane transport energization protein ExbD.
 
  0.898
SDG23642.1
TonB-dependent receptor.
  
  0.897
SDE79298.1
Biopolymer transport protein ExbD/TolR.
 
  0.887
SDG38301.1
Outer membrane transport energization protein ExbD.
 
  0.886
SDG38211.1
Outer membrane transport energization protein ExbB.
 
 0.879
SDD86347.1
WD40-like Beta Propeller Repeat.
 
 
 
 0.837
SDF18689.1
WD40-like Beta Propeller Repeat.
 
 
 
 0.824
Your Current Organism:
Dyadobacter soli
NCBI taxonomy Id: 659014
Other names: D. soli, DSM 25329, Dyadobacter soli Lee et al. 2010, Dyadobacter sp. MJ20, JCM 16232, KCTC 22481, strain MJ20
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