Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
IvrA | LLO_0405 | LLO_1852 | LLO_0405 | Legionella vir region protein; Equals llo1852. | Hypothetical protein; Equals llo0405. | 0.770 |
IvrA | LLO_2318 | LLO_1852 | LLO_2318 | Legionella vir region protein; Equals llo1852. | Hypothetical protein; Equals llo2318. | 0.513 |
IvrA | LLO_2340 | LLO_1852 | LLO_2340 | Legionella vir region protein; Equals llo1852. | Conserved hypothetical protein; Equals llo2340. | 0.624 |
IvrA | LLO_2396 | LLO_1852 | LLO_2396 | Legionella vir region protein; Equals llo1852. | Hypothetical protein; Equals llo2396. | 0.756 |
IvrA | pagP | LLO_1852 | LLO_0052 | Legionella vir region protein; Equals llo1852. | Lipid A palmitoyltransferase PagP; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors. | 0.612 |
LLO_0053 | pagP | LLO_0053 | LLO_0052 | Equals llo0053; similar to amino acid permease. | Lipid A palmitoyltransferase PagP; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors. | 0.586 |
LLO_0405 | IvrA | LLO_0405 | LLO_1852 | Hypothetical protein; Equals llo0405. | Legionella vir region protein; Equals llo1852. | 0.770 |
LLO_0405 | LLO_2318 | LLO_0405 | LLO_2318 | Hypothetical protein; Equals llo0405. | Hypothetical protein; Equals llo2318. | 0.637 |
LLO_0405 | LLO_2340 | LLO_0405 | LLO_2340 | Hypothetical protein; Equals llo0405. | Conserved hypothetical protein; Equals llo2340. | 0.628 |
LLO_0405 | cmr | LLO_0405 | LLO_1493 | Hypothetical protein; Equals llo0405. | Multidrug efflux system protein; Equals llo1493; similar to multidrug translocase. | 0.405 |
LLO_0405 | pagP | LLO_0405 | LLO_0052 | Hypothetical protein; Equals llo0405. | Lipid A palmitoyltransferase PagP; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors. | 0.694 |
LLO_2242 | pagP | LLO_2242 | LLO_0052 | Putative sulfatase; Equals llo2242. | Lipid A palmitoyltransferase PagP; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors. | 0.906 |
LLO_2318 | IvrA | LLO_2318 | LLO_1852 | Hypothetical protein; Equals llo2318. | Legionella vir region protein; Equals llo1852. | 0.513 |
LLO_2318 | LLO_0405 | LLO_2318 | LLO_0405 | Hypothetical protein; Equals llo2318. | Hypothetical protein; Equals llo0405. | 0.637 |
LLO_2318 | LLO_2340 | LLO_2318 | LLO_2340 | Hypothetical protein; Equals llo2318. | Conserved hypothetical protein; Equals llo2340. | 0.597 |
LLO_2318 | LLO_2396 | LLO_2318 | LLO_2396 | Hypothetical protein; Equals llo2318. | Hypothetical protein; Equals llo2396. | 0.665 |
LLO_2318 | pagP | LLO_2318 | LLO_0052 | Hypothetical protein; Equals llo2318. | Lipid A palmitoyltransferase PagP; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors. | 0.576 |
LLO_2340 | IvrA | LLO_2340 | LLO_1852 | Conserved hypothetical protein; Equals llo2340. | Legionella vir region protein; Equals llo1852. | 0.624 |
LLO_2340 | LLO_0405 | LLO_2340 | LLO_0405 | Conserved hypothetical protein; Equals llo2340. | Hypothetical protein; Equals llo0405. | 0.628 |
LLO_2340 | LLO_2318 | LLO_2340 | LLO_2318 | Conserved hypothetical protein; Equals llo2340. | Hypothetical protein; Equals llo2318. | 0.597 |
page 1 of 3