STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yccJUncharacterized protein yccJ. (76 aa)    
Predicted Functional Partners:
gabD
Putative NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.821
elaB
Uncharacterized protein yqjD; Protein of unknown function DUF883, ElaB, Bacterial protein of unknown function (DUF883).
   
    0.794
EAMY_1406
Hypothetical protein predicted by Glimmer/Critica.
       0.714
ygaU
Uncharacterized protein ygaU; Transport-associated, LysM domain.
   
    0.499
yqjC
Intersectin-1 (EH and SH3 domains protein 1); Protein of unknown function DUF1090, Protein of unknown function (DUF1090).
   
    0.497
prkA
Serine protein kinase; PrkA AAA.
   
    0.493
rhaT
Uncharacterized transporter AF_0788; Protein of unknown function DUF6, transmembrane, Integral membrane protein DUF6.
       0.484
EAMY_1992
Uncharacterized protein ycgB; Sporulation stage V, protein R, SpoVR like protein.
   
    0.476
osmY
Osmotically-inducible protein Y precursor; Transport-associated, putative phospholipid-binding domain.
   
    0.473
yqjD
Uncharacterized protein yqjD; Protein of unknown function DUF883, ElaB, Bacterial protein of unknown function (DUF883).
   
    0.468
Your Current Organism:
Erwinia amylovora
NCBI taxonomy Id: 665029
Other names: E. amylovora CFBP1430, Erwinia amylovora CFBP1430, Erwinia amylovora str. CFBP1430, Erwinia amylovora strain CFBP1430
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