STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
goaGPutative 4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (420 aa)    
Predicted Functional Partners:
mmsA
Methylmalonate-semialdehyde dehydrogenase, Aldehyde dehydrogenase family.
 0.932
gabD
Putative NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.921
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
     
 0.911
panC1
Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
     
  0.900
hsvA
Hrp-associated systemic virulence protein HsvA; Similar to L-arginine:lysine amidinostransferase (AmtA) of Pseudomonas syringae pv. phaseolicola, Required for systemic infection in apple shoots.
  
 
 0.808
EAMY_2392
Putative ABC transport system, periplasmic component; Bacterial extracellular solute-binding protein, family 1, TC 3.A.1.11.-The Polyamine/Opine/Phosphonate Uptake Transporter (POPT) Family.
 
    0.676
EAMY_2389
Putative GntR-family regulatory protein; Pyridoxal phosphate-dependent transferase, major region, Bacterial regulatory proteins, gntR family.
 
  
 0.615
EAMY_2390
Hypothetical protein predicted by Glimmer/Critica.
       0.572
EAMY_2393
Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.11.-The Polyamine/Opine/Phosphonate Uptake Transporter (POPT) Family.
 
     0.523
fldX
Probable dehydrogenase.
     
  0.499
Your Current Organism:
Erwinia amylovora
NCBI taxonomy Id: 665029
Other names: E. amylovora CFBP1430, Erwinia amylovora CFBP1430, Erwinia amylovora str. CFBP1430, Erwinia amylovora strain CFBP1430
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