KPL54312.1 protein (Prosthecomicrobium hirschii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KPL54312.1

Dolichol monophosphate mannose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)

Predicted Functional Partners:

KPL52900.1

0.958

KPL51963.1

0.764

KPL54890.1

0.764

KPL51034.1

0.727

KPL55512.1

0.703

ABB55_08350

0.694

KPL52086.1

0.681

KPL53900.1

0.681

cpsB

0.648

KPL56130.1

0.637

Your Current Organism:

Prosthecomicrobium hirschii

NCBI taxonomy Id: 665126
Other names: ATCC 27832, P. hirschii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABB55_08350	KPL51034.1	ABB55_08350	ABB55_01365	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
ABB55_08350	KPL51963.1	ABB55_08350	ABB55_06760	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
ABB55_08350	KPL52086.1	ABB55_08350	ABB55_07475	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
ABB55_08350	KPL53900.1	ABB55_08350	ABB55_18180	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
ABB55_08350	KPL54312.1	ABB55_08350	ABB55_20590	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dolichol monophosphate mannose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.694
ABB55_08350	KPL54890.1	ABB55_08350	ABB55_23920	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
ABB55_08350	KPL55512.1	ABB55_08350	ABB55_27465	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
ABB55_08350	KPL56130.1	ABB55_08350	ABB55_25605	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-phosphate glucose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
ABB55_08350	cpsB	ABB55_08350	ABB55_22380	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.945
KPL51034.1	ABB55_08350	ABB55_01365	ABB55_08350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
KPL51034.1	KPL52086.1	ABB55_01365	ABB55_07475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.731
KPL51034.1	KPL53900.1	ABB55_01365	ABB55_18180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.731
KPL51034.1	KPL54312.1	ABB55_01365	ABB55_20590	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dolichol monophosphate mannose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
KPL51034.1	KPL54890.1	ABB55_01365	ABB55_23920	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
KPL51034.1	KPL56130.1	ABB55_01365	ABB55_25605	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-phosphate glucose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.749
KPL51034.1	cpsB	ABB55_01365	ABB55_22380	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.773
KPL51963.1	ABB55_08350	ABB55_06760	ABB55_08350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
KPL51963.1	KPL52086.1	ABB55_06760	ABB55_07475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.731
KPL51963.1	KPL53900.1	ABB55_06760	ABB55_18180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.731
KPL51963.1	KPL54312.1	ABB55_06760	ABB55_20590	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dolichol monophosphate mannose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764