STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soxD1Sarcosine oxidase delta subunit SoxD. (95 aa)    
Predicted Functional Partners:
soxA1
Sarcosine oxidase alpha subunit SoxA.
 
 0.998
soxA4
Sarcosine oxidase alpha subunit SoxA.
 
 0.995
soxB1
Sarcosine oxidase beta subunit SoxB.
 
  0.992
soxB4
Sarcosine oxidase beta subunit SoxB.
 
  0.978
soxG1
Sarcosine oxidase gamma subunit SoxG.
 
 
 0.975
soxB5
Sarcosine oxidase beta subunit SoxB.
 
  0.972
soxA5
Sarcosine oxidase alpha subunit SoxA.
 
 
 0.950
soxD4
Sarcosine oxidase subunit SoxD.
  
  
 
0.901
soxG4
Sarcosine oxidase subunit SoxG.
 
 
 0.895
soxA3
Sarcosine oxidase alpha subunit SoxA.
 
 
 0.876
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.