STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGG88743.1Hypothetical protein. (418 aa)    
Predicted Functional Partners:
AGG90418.1
PFAM: VacJ like lipoprotein.
   
 
 0.787
AGG87959.1
Periplasmic component of the Tol biopolymer transport system; PFAM: WD40-like Beta Propeller Repeat.
  
 
 
 0.756
AGG87203.1
Hypothetical protein.
  
     0.750
AGG89731.1
PFAM: PAP2 superfamily.
  
     0.739
AGG87609.1
Hypothetical protein.
  
     0.730
AGG89536.1
Hypothetical protein.
  
     0.708
AGG87667.1
Putative peptidoglycan-binding domain-containing protein; PFAM: Putative peptidoglycan binding domain; CHAP domain.
  
     0.660
AGG87861.1
Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain.
  
     0.594
AGG90758.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
  
     0.590
AGG88947.1
Hypothetical protein.
  
     0.585
Your Current Organism:
Rhodanobacter denitrificans
NCBI taxonomy Id: 666685
Other names: DSM 23569, JCM 17641, R. denitrificans, Rhodanobacter denitrificans Prakash et al. 2012, Rhodanobacter sp. 116-2, Rhodanobacter sp. 2APBS1, Rhodanobacter sp. FW104-R3, strain 2APBS1
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