E9H667_DAPPU protein (Daphnia pulex) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

E9H667_DAPPU

ABC transporter. (1547 aa)

Predicted Functional Partners:

E9FXS0_DAPPU

0.760

E9FXS2_DAPPU

0.760

E9HJ55_DAPPU

0.533

E9GEZ2_DAPPU

0.530

E9HR77_DAPPU

0.518

E9FQR1_DAPPU

0.514

E9G0L1_DAPPU

0.504

E9G4T5_DAPPU

0.494

E9HC84_DAPPU

0.489

E9G043_DAPPU

0.488

Your Current Organism:

Daphnia pulex

NCBI taxonomy Id: 6669
Other names: D. pulex, common water flea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E9FQR1_DAPPU	E9G4T5_DAPPU	E9FQR1	E9G4T5	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.996
E9FQR1_DAPPU	E9H667_DAPPU	E9FQR1	E9H667	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	ABC transporter.	0.514
E9FQR1_DAPPU	E9HR77_DAPPU	E9FQR1	E9HR77	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	RING-type domain-containing protein.	0.832
E9FXS0_DAPPU	E9GEZ2_DAPPU	E9FXS0	E9GEZ2	Uncharacterized protein.	Uncharacterized protein.	0.608
E9FXS0_DAPPU	E9H667_DAPPU	E9FXS0	E9H667	Uncharacterized protein.	ABC transporter.	0.760
E9FXS2_DAPPU	E9GEZ2_DAPPU	E9FXS2	E9GEZ2	Uncharacterized protein.	Uncharacterized protein.	0.608
E9FXS2_DAPPU	E9H667_DAPPU	E9FXS2	E9H667	Uncharacterized protein.	ABC transporter.	0.760
E9G043_DAPPU	E9H667_DAPPU	E9G043	E9H667	ENTH domain-containing protein.	ABC transporter.	0.488
E9G0L1_DAPPU	E9H667_DAPPU	E9G0L1	E9H667	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins.	ABC transporter.	0.504
E9G0L1_DAPPU	E9HC84_DAPPU	E9G0L1	E9HC84	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.929
E9G4T5_DAPPU	E9FQR1_DAPPU	E9G4T5	E9FQR1	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.996
E9G4T5_DAPPU	E9H667_DAPPU	E9G4T5	E9H667	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	ABC transporter.	0.494
E9G4T5_DAPPU	E9HR77_DAPPU	E9G4T5	E9HR77	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	RING-type domain-containing protein.	0.774
E9GEZ2_DAPPU	E9FXS0_DAPPU	E9GEZ2	E9FXS0	Uncharacterized protein.	Uncharacterized protein.	0.608
E9GEZ2_DAPPU	E9FXS2_DAPPU	E9GEZ2	E9FXS2	Uncharacterized protein.	Uncharacterized protein.	0.608
E9GEZ2_DAPPU	E9H667_DAPPU	E9GEZ2	E9H667	Uncharacterized protein.	ABC transporter.	0.530
E9H667_DAPPU	E9FQR1_DAPPU	E9H667	E9FQR1	ABC transporter.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.514
E9H667_DAPPU	E9FXS0_DAPPU	E9H667	E9FXS0	ABC transporter.	Uncharacterized protein.	0.760
E9H667_DAPPU	E9FXS2_DAPPU	E9H667	E9FXS2	ABC transporter.	Uncharacterized protein.	0.760
E9H667_DAPPU	E9G043_DAPPU	E9H667	E9G043	ABC transporter.	ENTH domain-containing protein.	0.488