STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0213PadR family transcriptional regulator. (124 aa)    
Predicted Functional Partners:
ABC0212
Conserved hypothetical protein.
 
     0.948
ABC0261
Multidrug ABC transporter ATP-binding protein.
 
    0.565
ABC4052
Hypothetical protein.
  
    0.546
ABC0262
Multidrug ABC transporter permease.
  
     0.482
ABC3542
Conserved hypothetical protein.
  
     0.481
ABC0415
Hypothetical protein.
 
     0.478
ABC0937
Conserved hypothetical protein.
  
    0.469
ABC0196
Conserved hypothetical protein.
  
     0.447
ABC0279
GNAT family acetyltransferase; Probable gene remnant. Similar to the C-terminal region of Bacillus subtilis YdfD protein SW:P96681 (482 aa); locus_tag:ABC0277.
 
     0.438
ABC2560
HAD superfamily hydrolase.
   
    0.420
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.