STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaCUronate isomerase. (472 aa)    
Predicted Functional Partners:
uxaB
Altronate oxidoreductase.
 
 
 0.976
ABC1154
Altronate oxidoreductase.
 
 
 0.975
uxuA
Mannonate dehydratase 1; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
 
  
 0.954
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
  
 0.947
ABC0466
Conserved hypothetical protein; Catalyzes the dehydration of D-mannonate.
 
  
 0.866
ABC1148
Xylosidase/arabinosidase; alpha-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.852
xsa
alpha-L-arabinofuranosidase.
  
  
 0.846
araD
L-ribulose-5-phosphate 4-epimerase.
    
 0.832
abfA
alpha-L-arabinofuranosidase.
     
 0.826
xynB
Xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
    
 0.824
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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