STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1611Alpha-amylase. (955 aa)    
Predicted Functional Partners:
ABC0298
Alpha-glucosidase; Belongs to the glycosyl hydrolase 31 family.
 
 
 0.928
ABC4031
Maltogenic amylase.
  
  
 
0.926
cycB
Sugar ABC transporter substrate-binding protein.
 
  
 0.700
ABC4030
Maltose ABC transporter substrate-binding protein.
 
  
 0.697
ABC3518
Sugar ABC transporter permease.
 
  
 0.682
ABC4028
Maltose ABC transporter permease.
 
  
 0.681
gltA
Glutamate synthase large subunit.
  
  
 0.649
ptsG
ABC component PTS system glucose-specific enzyme II.
  
  
 0.594
bglP
A component PTS system glucose-specific enzyme II.
  
  
 0.594
spo0A
Stage 0 sporulation protein A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
      
 0.573
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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