ABC2731 protein (Bacillus clausii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABC2731

Metal-dependent hydrolase; Belongs to the UPF0173 family. (228 aa)

Predicted Functional Partners:

ABC2732

0.738

ABC2729

0.662

ABC2730

0.526

ABC2734

0.503

ribA

0.475

ribG

0.475

Your Current Organism:

Bacillus clausii

NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABC2729	ABC2730	ABC2729	ABC2730	Transcriptional regulator.	Conserved hypothetical protein.	0.572
ABC2729	ABC2731	ABC2729	ABC2731	Transcriptional regulator.	Metal-dependent hydrolase; Belongs to the UPF0173 family.	0.662
ABC2729	ABC2732	ABC2729	ABC2732	Transcriptional regulator.	Xaa-Pro dipeptidase; Belongs to the peptidase M24B family.	0.563
ABC2730	ABC2729	ABC2730	ABC2729	Conserved hypothetical protein.	Transcriptional regulator.	0.572
ABC2730	ABC2731	ABC2730	ABC2731	Conserved hypothetical protein.	Metal-dependent hydrolase; Belongs to the UPF0173 family.	0.526
ABC2731	ABC2729	ABC2731	ABC2729	Metal-dependent hydrolase; Belongs to the UPF0173 family.	Transcriptional regulator.	0.662
ABC2731	ABC2730	ABC2731	ABC2730	Metal-dependent hydrolase; Belongs to the UPF0173 family.	Conserved hypothetical protein.	0.526
ABC2731	ABC2732	ABC2731	ABC2732	Metal-dependent hydrolase; Belongs to the UPF0173 family.	Xaa-Pro dipeptidase; Belongs to the peptidase M24B family.	0.738
ABC2731	ABC2734	ABC2731	ABC2734	Metal-dependent hydrolase; Belongs to the UPF0173 family.	3-oxoacyl-[acyl-carrier-protein] reductase.	0.503
ABC2731	ribA	ABC2731	ABC1812	Metal-dependent hydrolase; Belongs to the UPF0173 family.	Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family.	0.475
ABC2731	ribG	ABC2731	ABC3987	Metal-dependent hydrolase; Belongs to the UPF0173 family.	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.	0.475
ABC2732	ABC2729	ABC2732	ABC2729	Xaa-Pro dipeptidase; Belongs to the peptidase M24B family.	Transcriptional regulator.	0.563
ABC2732	ABC2731	ABC2732	ABC2731	Xaa-Pro dipeptidase; Belongs to the peptidase M24B family.	Metal-dependent hydrolase; Belongs to the UPF0173 family.	0.738
ABC2734	ABC2731	ABC2734	ABC2731	3-oxoacyl-[acyl-carrier-protein] reductase.	Metal-dependent hydrolase; Belongs to the UPF0173 family.	0.503
ribA	ABC2731	ABC1812	ABC2731	Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family.	Metal-dependent hydrolase; Belongs to the UPF0173 family.	0.475
ribA	ribG	ABC1812	ABC3987	Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family.	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.	0.999
ribG	ABC2731	ABC3987	ABC2731	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.	Metal-dependent hydrolase; Belongs to the UPF0173 family.	0.475
ribG	ribA	ABC3987	ABC1812	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.	Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family.	0.999