Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABC2105 | ABC2676 | ABC2105 | ABC2676 | 5'-3' exonuclease. | DNA-directed DNA polymerase beta chain. | 0.833 |
ABC2105 | ABC4084 | ABC2105 | ABC4084 | 5'-3' exonuclease. | Hypothetical protein. | 0.980 |
ABC2105 | dnaN | ABC2105 | ABC0002 | 5'-3' exonuclease. | DNA-directed DNA polymerase III beta subunit DnaN; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required [...] | 0.981 |
ABC2105 | exoA | ABC2105 | ABC1955 | 5'-3' exonuclease. | Exodeoxyribonuclease III. | 0.816 |
ABC2105 | holB | ABC2105 | ABC0052 | 5'-3' exonuclease. | DNA polymerase III delta' subunit HolB. | 0.837 |
ABC2105 | ligA | ABC2105 | ABC1087 | 5'-3' exonuclease. | DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.616 |
ABC2105 | ligB | ABC2105 | ABC2809 | 5'-3' exonuclease. | ATP-dependent DNA ligase. | 0.785 |
ABC2105 | polA | ABC2105 | ABC2709 | 5'-3' exonuclease. | DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.976 |
ABC2676 | ABC2105 | ABC2676 | ABC2105 | DNA-directed DNA polymerase beta chain. | 5'-3' exonuclease. | 0.833 |
ABC2676 | ABC4084 | ABC2676 | ABC4084 | DNA-directed DNA polymerase beta chain. | Hypothetical protein. | 0.525 |
ABC2676 | dnaN | ABC2676 | ABC0002 | DNA-directed DNA polymerase beta chain. | DNA-directed DNA polymerase III beta subunit DnaN; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required [...] | 0.496 |
ABC2676 | exoA | ABC2676 | ABC1955 | DNA-directed DNA polymerase beta chain. | Exodeoxyribonuclease III. | 0.946 |
ABC2676 | ligB | ABC2676 | ABC2809 | DNA-directed DNA polymerase beta chain. | ATP-dependent DNA ligase. | 0.827 |
ABC2676 | polA | ABC2676 | ABC2709 | DNA-directed DNA polymerase beta chain. | DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.833 |
ABC2808 | ligB | ABC2808 | ABC2809 | Hypothetical protein. | ATP-dependent DNA ligase. | 0.600 |
ABC4084 | ABC2105 | ABC4084 | ABC2105 | Hypothetical protein. | 5'-3' exonuclease. | 0.980 |
ABC4084 | ABC2676 | ABC4084 | ABC2676 | Hypothetical protein. | DNA-directed DNA polymerase beta chain. | 0.525 |
ABC4084 | exoA | ABC4084 | ABC1955 | Hypothetical protein. | Exodeoxyribonuclease III. | 0.714 |
ABC4084 | holB | ABC4084 | ABC0052 | Hypothetical protein. | DNA polymerase III delta' subunit HolB. | 0.957 |
ABC4084 | ligB | ABC4084 | ABC2809 | Hypothetical protein. | ATP-dependent DNA ligase. | 0.836 |
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