STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_015296Putative phosphorylated adapter RNA export protein. (356 aa)    
Predicted Functional Partners:
C7M84_004355
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...]
   
 0.917
C7M84_000883
Nuclear cap-binding protein subunit 1.
   
 0.856
C7M84_022254
Arsenite-resistance protein 2-like protein.
   
 0.813
C7M84_008805
Uncharacterized protein.
   
 0.603
C7M84_006509
Putative ubiquitin-conjugating enzyme E2 J1-like.
      
 0.420
C7M84_021895
Putative N-alpha-acetyltransferase 25, NatB auxiliary subunit.
      
 0.420
C7M84_014663
Uncharacterized protein.
   
  
 0.417
C7M84_024869
IBB domain-containing protein.
      
 0.416
C7M84_001380
Putative RNA-binding protein NOB1-like.
      
 0.416
C7M84_025276
Putative zinc finger CCHC domain-containing protein 8-like.
      
 0.407
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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