STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_012001Putative transient receptor potential cation channel subfamily A member 1 isoform X1. (1100 aa)    
Predicted Functional Partners:
C7M84_007785
ANK_REP_REGION domain-containing protein.
  
     0.523
C7M84_007786
Ankyrin repeat and SOCS box protein 1.
  
     0.500
C7M84_018741
Cactus protein.
  
     0.488
C7M84_016507
Putative ankyrin repeat and SAM domain-containing protein 3 isoform X11.
  
     0.469
C7M84_011085
Putative 26S proteasome non-ATPase regulatory subunit 10 isoform X1.
  
     0.468
C7M84_024722
ANK_REP_REGION domain-containing protein.
  
     0.452
C7M84_015552
ANK_REP_REGION domain-containing protein.
  
     0.420
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.