STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_024142Uncharacterized protein. (468 aa)    
Predicted Functional Partners:
C7M84_012970
Putative armadillo repeat-containing protein 4.
   
 
 0.819
C7M84_015664
Putative coiled-coil domain-containing protein 40-like.
   
  
 0.773
C7M84_018716
Putative leucine-rich repeat-containing protein 48.
   
 
 0.751
C7M84_000763
WD repeat-containing protein.
   
 
 0.613
C7M84_013324
Uncharacterized protein.
   
 
 0.597
C7M84_007426
Uncharacterized protein.
  
 0.595
C7M84_004828
Putative EF-hand domain-containing family member C2.
  
 
 0.570
C7M84_006021
Putative dynein intermediate chain 2, axonemal-like isoform X1.
  
 
 
 0.533
C7M84_004025
Transcription factor 2B.
    
   0.527
C7M84_013048
Uncharacterized protein.
   
 0.476
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.