STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_008158Putative LIM domain transcription factor LMO4.2-like isoform X1. (157 aa)    
Predicted Functional Partners:
C7M84_007578
Putative LIM domain-binding protein 2-like isoform X6.
    
 0.937
C7M84_014584
BHLH domain-containing protein.
    
 0.653
C7M84_005872
Endothelial transcription factor GATA-2.
    
 0.653
C7M84_010234
Uncharacterized protein.
    
 0.518
C7M84_000642
Uncharacterized protein.
    
 0.518
C7M84_000643
Uncharacterized protein.
    
 0.518
C7M84_023140
BHLH domain-containing protein.
    
 0.518
C7M84_000486
Putative LIM/homeobox protein Lhx2-like.
   
 
 0.463
C7M84_006145
Fringe.
    
 
 0.450
C7M84_003024
Cyclin H.
     
 0.421
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.