STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_016180Putative integrase core domain protein. (961 aa)    
Predicted Functional Partners:
C7M84_017805
Gag-pol polyprotein.
  
     0.479
C7M84_017615
RT_RNaseH domain-containing protein.
  
  
  0.474
C7M84_018267
Gag pol polyprotein.
  
  
 
0.467
C7M84_021859
Peptidase A2 domain-containing protein.
  
     0.451
C7M84_000959
Transposon Ty3-G Gag-Pol polyprotein.
  
  
 
0.439
C7M84_020536
Uncharacterized protein.
  
  
 
0.434
C7M84_017541
Integrase catalytic domain-containing protein.
  
  
 
0.432
C7M84_015930
Integrase catalytic domain-containing protein.
  
  
 
0.432
C7M84_001872
Integrase catalytic domain-containing protein.
  
  
 
0.430
C7M84_025359
Integrase catalytic domain-containing protein.
  
  
 
0.426
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.