STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_011102Tetratricopeptide repeat protein 39C; Belongs to the synaptobrevin family. (962 aa)    
Predicted Functional Partners:
C7M84_006908
TPR_REGION domain-containing protein.
      
 0.562
C7M84_022678
Putative tetratricopeptide repeat protein 5-like.
      
 0.536
C7M84_023311
Putative tetratricopeptide repeat protein 9C.
      
 0.503
C7M84_011490
Putative HAUS augmin-like complex subunit 4.
      
 0.491
C7M84_021899
Putative ras-related protein Rab-30.
      
 0.437
C7M84_008435
Putative intraflagellar transport protein 56-like isoform X3.
      
 0.433
C7M84_016863
Putative coiled-coil domain-containing protein 92-like.
      
 0.414
C7M84_004460
Uncharacterized protein.
      
 0.402
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.