STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_023077Sterol regulatory element-binding protein 1. (1097 aa)    
Predicted Functional Partners:
C7M84_009782
Putative sterol regulatory element-binding protein cleavage-activating protein.
   
 0.955
C7M84_023711
Membrane-bound transcription factor site-2 protease.
    
 0.764
C7M84_012109
Importin N-terminal domain-containing protein.
    
 0.720
C7M84_024090
Putative importin subunit beta-1-like isoform X2.
    
 0.720
MED15
Mediator of RNA polymerase II transcription subunit 15; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 
 0.719
C7M84_009685
Membrane-bound transcription factor site-1 protease.
     
 0.693
C7M84_003389
3-hydroxy-3-methylglutaryl coenzyme A reductase.
     
 0.631
C7M84_016479
Uncharacterized protein.
   
 0.597
C7M84_008593
SSD domain-containing protein.
   
 0.597
C7M84_020508
Niemann-pick C1.
   
 0.597
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.