STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR58800.1Protein of unknown function. (224 aa)    
Predicted Functional Partners:
SFR58812.1
Hypothetical protein.
 
    0.932
SFR58824.1
Hypothetical protein.
 
     0.911
SFR58857.1
ATPase family associated with various cellular activities (AAA).
 
     0.847
SFR58870.1
Hypothetical protein.
 
     0.809
SFR58836.1
Hypothetical protein.
       0.757
SFR58883.1
Hypothetical protein.
 
     0.751
SFR43330.1
Endonuclease/Exonuclease/phosphatase family protein.
  
     0.623
SFR58847.1
Hypothetical protein.
       0.610
SFR56140.1
Hypothetical protein.
  
     0.503
SFR51009.1
Hypothetical protein.
  
     0.478
Your Current Organism:
Litoreibacter janthinus
NCBI taxonomy Id: 670154
Other names: DSM 26921, JCM 16492, KMM 3842, L. janthinus, Litoreibacter janthinus Romanenko et al. 2011, NRIC 0772, alpha proteobacterium KMM 3842
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.