STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
erf1Eukaryotic translation termination factor 1. (508 aa)    
Predicted Functional Partners:
eRF3
Eukaryotic release factor 3.
   
 0.999
abcE1
RNaseL inhibitor-like protein.
   
 
 0.998
rps30-2
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.995
rpl8
60S ribosomal protein L8.
   
 0.918
rps3
40S ribosomal protein S3.
   
 0.883
PPL_10451
Uncharacterized protein.
    
 0.883
PPL_05737
Ubiquitin-like domain-containing protein.
   
  0.877
rps2
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
   
 0.875
efaAI
Elongation factor 1 alpha.
   
 0.873
PPL_08282
Elongation factor EF1 alpha.
   
 0.873
Your Current Organism:
Heterostelium album
NCBI taxonomy Id: 670386
Other names: H. album PN500, Heterostelium album PN500, Heterostelium pallidum PN500, Polysphondylium pallidum PN500
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