STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPL_05225Uncharacterized protein. (689 aa)    
Predicted Functional Partners:
taf1
Bromo domain-containing protein.
    
 0.968
taf6
TATA-binding protein-associated-factor.
   
 0.968
PPL_01584
Uncharacterized protein.
    
 0.967
PPL_02002
TFIID_20kDa domain-containing protein.
    
 0.967
taf7
Transcription initiation factor TFIID subunit.
    
 0.967
PPL_04829
TAF4 domain-containing protein.
    
 0.967
PPL_05242
Uncharacterized protein.
    
 0.967
gtf2a1
Transcription factor IIA.
   
 0.966
taf9
Transcription initiation factor TFIID subunit.
    
 0.966
taf11
Transcription initiation factor TFIID subunit.
   
 0.965
Your Current Organism:
Heterostelium album
NCBI taxonomy Id: 670386
Other names: H. album PN500, Heterostelium album PN500, Heterostelium pallidum PN500, Polysphondylium pallidum PN500
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.