STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPL_05709Uncharacterized protein; Belongs to the synaptobrevin family. (214 aa)    
Predicted Functional Partners:
PPL_06026
V-SNARE family protein.
    
 0.999
syn5
t-SNARE family protein.
   
 0.999
PPL_12312
Synaptobrevin domain-containing protein; Belongs to the synaptobrevin family.
    
 0.997
PPL_09408
t-SNARE coiled-coil homology domain-containing protein.
   
 0.997
PPL_05918
Syntaxin-18_N domain-containing protein.
   
 0.996
PPL_10164
Uncharacterized protein.
    
 
 0.995
snpA
Soluble NSF attachment protein alpha isoform.
   
 0.993
PPL_07856
Putative transmembrane protein.
    
 0.986
PPL_05466
Uncharacterized protein.
   
 0.968
syn1A
t-SNARE family protein; Belongs to the syntaxin family.
    
 0.967
Your Current Organism:
Heterostelium album
NCBI taxonomy Id: 670386
Other names: H. album PN500, Heterostelium album PN500, Heterostelium pallidum PN500, Polysphondylium pallidum PN500
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.