STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPL_10528Uncharacterized protein. (1681 aa)    
Predicted Functional Partners:
PPL_03787
Uncharacterized protein.
   
 0.999
PPL_10132
Uncharacterized protein.
   
 0.999
rpl10a
S60 ribosomal protein L10a.
    
 0.964
PPL_05737
Ubiquitin-like domain-containing protein.
    
  0.963
mtmr15
Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
    
 0.954
nutf2
Nuclear transport factor 2.
   
 0.934
PPL_08820
WD40 repeat-containing protein.
    
 0.905
npl4
Nuclear protein localization 4.
    
 0.889
atr1
Protein kinase; Belongs to the PI3/PI4-kinase family.
   
 0.869
ercc1
DNA excision repair protein 1.
     
 0.858
Your Current Organism:
Heterostelium album
NCBI taxonomy Id: 670386
Other names: H. album PN500, Heterostelium album PN500, Heterostelium pallidum PN500, Polysphondylium pallidum PN500
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