spt5 protein (Heterostelium album) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

spt5

Transcription initiation factor Spt5. (680 aa)

Predicted Functional Partners:

spt4

0.999

rpb2

0.980

spt16

0.968

rpb3

0.967

PPL_10076

0.967

rpb5

0.966

PPL_07964

0.965

rpb6

0.958

rpb9

0.957

rpb8

0.954

Your Current Organism:

Heterostelium album

NCBI taxonomy Id: 670386
Other names: H. album PN500, Heterostelium album PN500, Heterostelium pallidum PN500, Polysphondylium pallidum PN500

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PPL_07964	PPL_10076	D3BHG2	D3BQ93	RNA polymerase II core subunit.	RNA polymerase II core subunit.	0.999
PPL_07964	rpb2	D3BHG2	D3BHD6	RNA polymerase II core subunit.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
PPL_07964	rpb3	D3BHG2	D3AXW3	RNA polymerase II core subunit.	RNA polymerase II core subunit.	0.999
PPL_07964	rpb5	D3BHG2	D3BQV7	RNA polymerase II core subunit.	RNA polymerase II core subunit.	0.999
PPL_07964	rpb6	D3BHG2	D3B413	RNA polymerase II core subunit.	RNA polymerase II core subunit.	0.999
PPL_07964	rpb8	D3BHG2	D3BTL0	RNA polymerase II core subunit.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
PPL_07964	rpb9	D3BHG2	D3BKZ5	RNA polymerase II core subunit.	RNA polymerase II core subunit.	0.999
PPL_07964	spt16	D3BHG2	D3AWW1	RNA polymerase II core subunit.	FACT complex subunit SPT16.	0.964
PPL_07964	spt4	D3BHG2	D3BNN0	RNA polymerase II core subunit.	Transcription initiation factor Spt4.	0.998
PPL_07964	spt5	D3BHG2	D3BSU4	RNA polymerase II core subunit.	Transcription initiation factor Spt5.	0.965
PPL_10076	PPL_07964	D3BQ93	D3BHG2	RNA polymerase II core subunit.	RNA polymerase II core subunit.	0.999
PPL_10076	rpb2	D3BQ93	D3BHD6	RNA polymerase II core subunit.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
PPL_10076	rpb3	D3BQ93	D3AXW3	RNA polymerase II core subunit.	RNA polymerase II core subunit.	0.999
PPL_10076	rpb5	D3BQ93	D3BQV7	RNA polymerase II core subunit.	RNA polymerase II core subunit.	0.999
PPL_10076	rpb6	D3BQ93	D3B413	RNA polymerase II core subunit.	RNA polymerase II core subunit.	0.999
PPL_10076	rpb8	D3BQ93	D3BTL0	RNA polymerase II core subunit.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
PPL_10076	rpb9	D3BQ93	D3BKZ5	RNA polymerase II core subunit.	RNA polymerase II core subunit.	0.999
PPL_10076	spt16	D3BQ93	D3AWW1	RNA polymerase II core subunit.	FACT complex subunit SPT16.	0.972
PPL_10076	spt4	D3BQ93	D3BNN0	RNA polymerase II core subunit.	Transcription initiation factor Spt4.	0.998
PPL_10076	spt5	D3BQ93	D3BSU4	RNA polymerase II core subunit.	Transcription initiation factor Spt5.	0.967