STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tolQTolQ protein; Function of homologous gene experimentally demonstrated in an other organism; transporter. (239 aa)    
Predicted Functional Partners:
exbD
Biopolymer transport protein exbD.
 
 
 0.986
DAMO_0496
Protein of unknown function; No homology to any previously reported sequences.
 
 
 0.958
tolB
Protein tolB precursor; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
  
 0.940
DAMO_1094
TolR protein.
 
 
 0.938
DAMO_1914
Biopolymer transport protein ExbD/TolR.
 
 
 0.921
pal
OmpA/MotB domain protein precursor; Belongs to the Pal lipoprotein family.
 
   
 0.886
pal-3
Outer membrane lipoprotein omp16 precursor (peptidoglycan-associated lipoprotein) (modular protein); Belongs to the Pal lipoprotein family.
 
   
 0.765
pal-2
Exported protein of unknown function; No homology to any previously reported sequences; Belongs to the Pal lipoprotein family.
 
   
 0.761
DAMO_0499
Exported protein of unknown function; No homology to any previously reported sequences.
 
  
 0.750
DAMO_1653
Putative Surface antigen (D15) precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.741
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.