DAMO_0983 protein (Methylomirabilis oxyfera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DAMO_0983

UspA. (155 aa)

Predicted Functional Partners:

DAMO_0984

0.773

DAMO_1014

0.765

DAMO_0018

0.764

DAMO_0985

0.757

DAMO_0986

0.757

DAMO_0987

0.446

DAMO_0982

0.436

Your Current Organism:

Methylomirabilis oxyfera

NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
DAMO_0018	DAMO_0983	Universal stress protein-like (fragment).	UspA.	0.764
DAMO_0982	DAMO_0983	Putative pqq coenzyme synthesis protein (pqqE); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	UspA.	0.436
DAMO_0982	DAMO_0984	Putative pqq coenzyme synthesis protein (pqqE); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Homologs of previously reported genes of unknown function.	0.436
DAMO_0982	DAMO_0985	Putative pqq coenzyme synthesis protein (pqqE); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Adenylylsulfate kinase.	0.430
DAMO_0982	DAMO_0986	Putative pqq coenzyme synthesis protein (pqqE); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Protein of unknown function; No homology to any previously reported sequences.	0.428
DAMO_0983	DAMO_0018	UspA.	Universal stress protein-like (fragment).	0.764
DAMO_0983	DAMO_0982	UspA.	Putative pqq coenzyme synthesis protein (pqqE); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.436
DAMO_0983	DAMO_0984	UspA.	Homologs of previously reported genes of unknown function.	0.773
DAMO_0983	DAMO_0985	UspA.	Adenylylsulfate kinase.	0.757
DAMO_0983	DAMO_0986	UspA.	Protein of unknown function; No homology to any previously reported sequences.	0.757
DAMO_0983	DAMO_0987	UspA.	Putative HspC2 heat shock protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; factor; Belongs to the small heat shock protein (HSP20) family.	0.446
DAMO_0983	DAMO_1014	UspA.	Protein of unknown function; No homology to any previously reported sequences.	0.765
DAMO_0984	DAMO_0982	Homologs of previously reported genes of unknown function.	Putative pqq coenzyme synthesis protein (pqqE); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.436
DAMO_0984	DAMO_0983	Homologs of previously reported genes of unknown function.	UspA.	0.773
DAMO_0984	DAMO_0985	Homologs of previously reported genes of unknown function.	Adenylylsulfate kinase.	0.766
DAMO_0984	DAMO_0986	Homologs of previously reported genes of unknown function.	Protein of unknown function; No homology to any previously reported sequences.	0.757
DAMO_0984	DAMO_0987	Homologs of previously reported genes of unknown function.	Putative HspC2 heat shock protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; factor; Belongs to the small heat shock protein (HSP20) family.	0.411
DAMO_0985	DAMO_0982	Adenylylsulfate kinase.	Putative pqq coenzyme synthesis protein (pqqE); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.430
DAMO_0985	DAMO_0983	Adenylylsulfate kinase.	UspA.	0.757
DAMO_0985	DAMO_0984	Adenylylsulfate kinase.	Homologs of previously reported genes of unknown function.	0.766