STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DAMO_1259Transcriptional regulator, TetR family. (200 aa)    
Predicted Functional Partners:
DAMO_1261
Acriflavin resistance protein (fragment); Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.821
DAMO_1260
Putative Macrolide-specific efflux protein macA precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.793
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.678
DAMO_1258
Protein of unknown function; No homology to any previously reported sequences.
       0.555
DAMO_2619
Putative Diguanylate kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.541
DAMO_1690
Putative Transcriptional regulator, Crp/Fnr family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
   
 0.499
DAMO_1230
3-hydroxyacyl-CoA dehydrogenase NAD-binding precursor.
  
  
 0.492
DAMO_1783
Protein of unknown function; No homology to any previously reported sequences.
  
  
 0.471
DAMO_3139
Putative Diguanylate kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
   
 0.462
actP
Copper-transporting P-type ATPase; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
  
 0.445
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.