STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VV0214annotation not available (673 aa)    
Predicted Functional Partners:
VV0216
annotation not available
 
  
 0.984
VV0217
annotation not available
  
 0.980
VV0215
annotation not available
  
 0.965
VV0213
annotation not available
 
  
 0.961
VV0220
annotation not available
 
   
 0.931
VV0221
annotation not available
 
  
 0.931
VV0219
annotation not available
 
   
 0.929
VV0222
Type II secretion system protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
 
  
 0.929
VV0223
Type II secretion system protein M; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
 
   
 0.916
VV0224
annotation not available
 
   
 0.875
Your Current Organism:
Vibrio vulnificus
NCBI taxonomy Id: 672
Other names: ATCC 27562, BCRC 12905, Beneckea vulnifica, CAIM 610, CCRC 12905, CCUG 13448, CCUG 16394, CIP 75.4, DSM 10143, IFO 15645, JCM 3725, LMG 13545, NBRC 15645, V. vulnificus, Vibrio vulnificus, strain 324
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