STRINGSTRING
traD protein (Vibrio vulnificus) - STRING interaction network
"traD" - annotation not available in Vibrio vulnificus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traDannotation not available (658 aa)    
Predicted Functional Partners:
traI
annotation not available (1037 aa)
 
     
  0.983
AIL69355.1
annotation not available (118 aa)
              0.845
AIL69354.1
annotation not available (129 aa)
              0.826
AIL69349.1
annotation not available (245 aa)
   
          0.662
VV0130
annotation not available (450 aa)
   
   
  0.652
AIL69219.1
annotation not available (450 aa)
   
   
  0.652
AIL71297.1
annotation not available (468 aa)
 
   
  0.642
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box)- 5’-TTATC[CA]A[CA]A-3’. DnaA binds to ATP and to acidic phospholipids (459 aa)
           
  0.638
VV0132
annotation not available (725 aa)
 
   
  0.579
AIL69221.1
annotation not available (725 aa)
 
   
  0.579
Your Current Organism:
Vibrio vulnificus
NCBI taxonomy Id: 672
Other names: ATCC 27562, BCRC 12905, Beneckea vulnifica, CAIM 610, CCRC 12905, CCUG 13448, CCUG 16394, CIP 75.4, DSM 10143, IFO 15645, JCM 3725, LMG 13545, NBRC 15645, V. vulnificus, Vibrio vulnificus, strain 324
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