rpmB protein (Vibrio vulnificus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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protein homology

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[Homology]

Score

rpmB

annotation not available (78 aa)

Predicted Functional Partners:

rpmG

0.998

rpsN

0.989

rplI

0.988

rpsR

0.987

rplQ

0.985

rpmF

0.984

rpsJ

0.983

rplL

0.983

rplU

0.982

rpsH

0.982

Your Current Organism:

Vibrio vulnificus

NCBI taxonomy Id: 672
Other names: ATCC 27562, BCRC 12905, Beneckea vulnifica, CAIM 610, CCRC 12905, CCUG 13448, CCUG 16394, CIP 75.4, DSM 10143, IFO 15645, JCM 3725, LMG 13545, NBRC 15645, V. vulnificus, Vibrio vulnificus, strain 324

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplI	rplL	VV93_v1c27100	VV93_v1c28770	50S ribosomal protein L9; Binds to the 23S rRNA	50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation	0.986
rplI	rplQ	VV93_v1c27100	VV93_v1c03720	50S ribosomal protein L9; Binds to the 23S rRNA	annotation not available	0.991
rplI	rplU	VV93_v1c27100	VV93_v1c04370	50S ribosomal protein L9; Binds to the 23S rRNA	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20	0.988
rplI	rpmB	VV93_v1c27100	VV93_v1c02780	50S ribosomal protein L9; Binds to the 23S rRNA	annotation not available	0.988
rplI	rpmF	VV93_v1c27100	VV93_v1c11880	50S ribosomal protein L9; Binds to the 23S rRNA	annotation not available	0.974
rplI	rpmG	VV93_v1c27100	VV93_v1c02790	50S ribosomal protein L9; Binds to the 23S rRNA	annotation not available	0.961
rplI	rpsH	VV93_v1c27100	VV93_v1c03600	50S ribosomal protein L9; Binds to the 23S rRNA	30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit	0.979
rplI	rpsJ	VV93_v1c27100	VV93_v1c03450	50S ribosomal protein L9; Binds to the 23S rRNA	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes	0.985
rplI	rpsN	VV93_v1c27100	VV93_v1c03590	50S ribosomal protein L9; Binds to the 23S rRNA	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site	0.966
rplI	rpsR	VV93_v1c27100	VV93_v1c27110	50S ribosomal protein L9; Binds to the 23S rRNA	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit	0.999
rplL	rplI	VV93_v1c28770	VV93_v1c27100	50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation	50S ribosomal protein L9; Binds to the 23S rRNA	0.986
rplL	rplQ	VV93_v1c28770	VV93_v1c03720	50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation	annotation not available	0.994
rplL	rplU	VV93_v1c28770	VV93_v1c04370	50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20	0.990
rplL	rpmB	VV93_v1c28770	VV93_v1c02780	50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation	annotation not available	0.983
rplL	rpmF	VV93_v1c28770	VV93_v1c11880	50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation	annotation not available	0.983
rplL	rpmG	VV93_v1c28770	VV93_v1c02790	50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation	annotation not available	0.973
rplL	rpsH	VV93_v1c28770	VV93_v1c03600	50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation	30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit	0.993
rplL	rpsJ	VV93_v1c28770	VV93_v1c03450	50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes	0.994
rplL	rpsN	VV93_v1c28770	VV93_v1c03590	50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site	0.992
rplL	rpsR	VV93_v1c28770	VV93_v1c27110	50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit	0.990

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