Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as simple tabular text output:
TSV: tab separated values - can be opened in Excel
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and annotated functions of the network proteins
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplI | rplL | VV93_v1c27100 | VV93_v1c28770 | 50S ribosomal protein L9; Binds to the 23S rRNA | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation | 0.986 |
rplI | rplQ | VV93_v1c27100 | VV93_v1c03720 | 50S ribosomal protein L9; Binds to the 23S rRNA | annotation not available | 0.991 |
rplI | rplU | VV93_v1c27100 | VV93_v1c04370 | 50S ribosomal protein L9; Binds to the 23S rRNA | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 | 0.988 |
rplI | rpmB | VV93_v1c27100 | VV93_v1c02780 | 50S ribosomal protein L9; Binds to the 23S rRNA | annotation not available | 0.988 |
rplI | rpmF | VV93_v1c27100 | VV93_v1c11880 | 50S ribosomal protein L9; Binds to the 23S rRNA | annotation not available | 0.974 |
rplI | rpmG | VV93_v1c27100 | VV93_v1c02790 | 50S ribosomal protein L9; Binds to the 23S rRNA | annotation not available | 0.961 |
rplI | rpsH | VV93_v1c27100 | VV93_v1c03600 | 50S ribosomal protein L9; Binds to the 23S rRNA | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit | 0.979 |
rplI | rpsJ | VV93_v1c27100 | VV93_v1c03450 | 50S ribosomal protein L9; Binds to the 23S rRNA | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes | 0.985 |
rplI | rpsN | VV93_v1c27100 | VV93_v1c03590 | 50S ribosomal protein L9; Binds to the 23S rRNA | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site | 0.966 |
rplI | rpsR | VV93_v1c27100 | VV93_v1c27110 | 50S ribosomal protein L9; Binds to the 23S rRNA | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit | 0.999 |
rplL | rplI | VV93_v1c28770 | VV93_v1c27100 | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation | 50S ribosomal protein L9; Binds to the 23S rRNA | 0.986 |
rplL | rplQ | VV93_v1c28770 | VV93_v1c03720 | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation | annotation not available | 0.994 |
rplL | rplU | VV93_v1c28770 | VV93_v1c04370 | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 | 0.990 |
rplL | rpmB | VV93_v1c28770 | VV93_v1c02780 | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation | annotation not available | 0.983 |
rplL | rpmF | VV93_v1c28770 | VV93_v1c11880 | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation | annotation not available | 0.983 |
rplL | rpmG | VV93_v1c28770 | VV93_v1c02790 | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation | annotation not available | 0.973 |
rplL | rpsH | VV93_v1c28770 | VV93_v1c03600 | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit | 0.993 |
rplL | rpsJ | VV93_v1c28770 | VV93_v1c03450 | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes | 0.994 |
rplL | rpsN | VV93_v1c28770 | VV93_v1c03590 | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site | 0.992 |
rplL | rpsR | VV93_v1c28770 | VV93_v1c27110 | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit | 0.990 |
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