STRINGSTRING
rpoN protein (Vibrio vulnificus) - STRING interaction network
"rpoN" - RNA polymerase sigma-54 factor in Vibrio vulnificus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoNRNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (487 aa)    
Predicted Functional Partners:
rpoS
annotation not available (330 aa)
         
  0.958
flaK
annotation not available (487 aa)
 
     
  0.926
yhbH
annotation not available (95 aa)
 
   
  0.922
ptsN
annotation not available (148 aa)
 
   
  0.916
VV0445
Nucleotide-binding protein VV0445; Displays ATPase and GTPase activities (287 aa)
 
   
  0.882
hydG
Regulatory protein LuxO; Involved in the regulation of different processes depending on the cell density. Acts together with sigma-54 to repress, perhaps indirectly, some genes (By similarity) (466 aa)
 
     
  0.875
VV1712
annotation not available (501 aa)
 
     
  0.874
ptsO
annotation not available (91 aa)
   
   
  0.864
lptA
Lipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm (164 aa)
 
   
  0.861
VV1407
annotation not available (509 aa)
   
     
  0.843
Your Current Organism:
Vibrio vulnificus
NCBI taxonomy Id: 672
Other names: ATCC 27562, BCRC 12905, Beneckea vulnifica, CAIM 610, CCRC 12905, CCUG 13448, CCUG 16394, CIP 75.4, DSM 10143, IFO 15645, JCM 3725, LMG 13545, NBRC 15645, V. vulnificus, Vibrio vulnificus, strain 324
Server load: low (10%) [HD]