Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but resolution at 400 dpi
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as simple tabular text output:
TSV: tab separated values - can be opened in Excel
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and annotated functions of the network proteins
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| VV0765 | engA | VV93_v1c07110 | VV93_v1c07160 | annotation not available | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis | 0.513 |
| VV0765 | ispG | VV93_v1c07110 | VV93_v1c07120 | annotation not available | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate; Belongs to the IspG family | 0.930 |
| VV0765 | ndk | VV93_v1c07110 | VV93_v1c07090 | annotation not available | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate | 0.477 |
| VV0765 | pilF | VV93_v1c07110 | VV93_v1c14000 | annotation not available | annotation not available | 0.474 |
| VV0765 | rlmN | VV93_v1c07110 | VV93_v1c07100 | annotation not available | Dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family | 0.582 |
| VV0986 | rlmN | VV93_v1c09120 | VV93_v1c07100 | annotation not available | Dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family | 0.735 |
| VV1227 | engA | VV93_v1c11440 | VV93_v1c07160 | annotation not available | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis | 0.763 |
| VV1227 | rlmN | VV93_v1c11440 | VV93_v1c07100 | annotation not available | Dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family | 0.725 |
| VV1227 | rsmB | VV93_v1c11440 | VV93_v1c29490 | annotation not available | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA | 0.459 |
| VV2873 | VV2880 | VV93_v1c25800 | VV93_v1c25860 | Pyridoxal phosphate homeostasis protein; Pyridoxal 5’-phosphate (PLP)-binding protein, which is involved in PLP homeostasis | Oxygen-independent coproporphyrinogen-III oxidase-like protein; Involved in the biosynthesis of porphyrin-containing compound | 0.788 |
| VV2873 | rlmN | VV93_v1c25800 | VV93_v1c07100 | Pyridoxal phosphate homeostasis protein; Pyridoxal 5’-phosphate (PLP)-binding protein, which is involved in PLP homeostasis | Dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family | 0.636 |
| VV2880 | VV2873 | VV93_v1c25860 | VV93_v1c25800 | Oxygen-independent coproporphyrinogen-III oxidase-like protein; Involved in the biosynthesis of porphyrin-containing compound | Pyridoxal phosphate homeostasis protein; Pyridoxal 5’-phosphate (PLP)-binding protein, which is involved in PLP homeostasis | 0.788 |
| VV2880 | rlmN | VV93_v1c25860 | VV93_v1c07100 | Oxygen-independent coproporphyrinogen-III oxidase-like protein; Involved in the biosynthesis of porphyrin-containing compound | Dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family | 0.645 |
| engA | VV0765 | VV93_v1c07160 | VV93_v1c07110 | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis | annotation not available | 0.513 |
| engA | VV1227 | VV93_v1c07160 | VV93_v1c11440 | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis | annotation not available | 0.763 |
| engA | ispG | VV93_v1c07160 | VV93_v1c07120 | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate; Belongs to the IspG family | 0.599 |
| engA | ndk | VV93_v1c07160 | VV93_v1c07090 | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate | 0.411 |
| engA | rlmN | VV93_v1c07160 | VV93_v1c07100 | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis | Dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family | 0.657 |
| engA | rsmB | VV93_v1c07160 | VV93_v1c29490 | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA | 0.497 |
| ispG | VV0765 | VV93_v1c07120 | VV93_v1c07110 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate; Belongs to the IspG family | annotation not available | 0.930 |
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