Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but resolution at 400 dpi
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as simple tabular text output:
TSV: tab separated values - can be opened in Excel
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and annotated functions of the network proteins
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| VV0765 | VV0768 | VV93_v1c07110 | VV93_v1c07140 | annotation not available | annotation not available | 0.770 |
| VV0765 | bamB | VV93_v1c07110 | VV93_v1c07150 | annotation not available | Outer membrane protein assembly factor BamB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane | 0.772 |
| VV0765 | hisS | VV93_v1c07110 | VV93_v1c07130 | annotation not available | annotation not available | 0.768 |
| VV0765 | ispG | VV93_v1c07110 | VV93_v1c07120 | annotation not available | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate; Belongs to the IspG family | 0.930 |
| VV0765 | lpoA | VV93_v1c07110 | VV93_v1c05460 | annotation not available | Penicillin-binding protein activator LpoA; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1A (PBP1a) | 0.608 |
| VV0765 | mreB | VV93_v1c07110 | VV93_v1c26570 | annotation not available | annotation not available | 0.838 |
| VV0765 | mreC | VV93_v1c07110 | VV93_v1c26560 | annotation not available | Cell shape-determining protein MreC; Involved in formation and maintenance of cell shape | 0.864 |
| VV0765 | mreD | VV93_v1c07110 | VV93_v1c26550 | annotation not available | Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins | 0.551 |
| VV0765 | rlmN | VV93_v1c07110 | VV93_v1c07100 | annotation not available | Dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family | 0.582 |
| VV0765 | rodA | VV93_v1c07110 | VV93_v1c08420 | annotation not available | Peptidoglycan glycosyltransferase MrdB; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily | 0.542 |
| VV0768 | VV0765 | VV93_v1c07140 | VV93_v1c07110 | annotation not available | annotation not available | 0.770 |
| VV0768 | bamB | VV93_v1c07140 | VV93_v1c07150 | annotation not available | Outer membrane protein assembly factor BamB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane | 0.988 |
| VV0768 | hisS | VV93_v1c07140 | VV93_v1c07130 | annotation not available | annotation not available | 0.968 |
| VV0768 | ispG | VV93_v1c07140 | VV93_v1c07120 | annotation not available | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate; Belongs to the IspG family | 0.904 |
| VV0768 | lpoA | VV93_v1c07140 | VV93_v1c05460 | annotation not available | Penicillin-binding protein activator LpoA; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1A (PBP1a) | 0.416 |
| VV0768 | mreD | VV93_v1c07140 | VV93_v1c26550 | annotation not available | Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins | 0.448 |
| VV0768 | rlmN | VV93_v1c07140 | VV93_v1c07100 | annotation not available | Dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family | 0.487 |
| bamB | VV0765 | VV93_v1c07150 | VV93_v1c07110 | Outer membrane protein assembly factor BamB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane | annotation not available | 0.772 |
| bamB | VV0768 | VV93_v1c07150 | VV93_v1c07140 | Outer membrane protein assembly factor BamB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane | annotation not available | 0.988 |
| bamB | hisS | VV93_v1c07150 | VV93_v1c07130 | Outer membrane protein assembly factor BamB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane | annotation not available | 0.947 |
page 1 of 3
