Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AIL69252.1 | rlmM | VV93_v1c01520 | VV93_v1c08180 | Hypothetical protein. | RNA 2'-O-ribose methyltransferase; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. | 0.427 |
AIL69909.1 | AIL69910.1 | VV93_v1c08150 | VV93_v1c08160 | DNA-binding transcriptional activator GcvA; Belongs to the LysR transcriptional regulatory family. | Alpha/beta hydrolase. | 0.800 |
AIL69909.1 | AIL69911.1 | VV93_v1c08150 | VV93_v1c08170 | DNA-binding transcriptional activator GcvA; Belongs to the LysR transcriptional regulatory family. | Hypothetical protein. | 0.802 |
AIL69909.1 | rlmM | VV93_v1c08150 | VV93_v1c08180 | DNA-binding transcriptional activator GcvA; Belongs to the LysR transcriptional regulatory family. | RNA 2'-O-ribose methyltransferase; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. | 0.800 |
AIL69910.1 | AIL69909.1 | VV93_v1c08160 | VV93_v1c08150 | Alpha/beta hydrolase. | DNA-binding transcriptional activator GcvA; Belongs to the LysR transcriptional regulatory family. | 0.800 |
AIL69910.1 | AIL69911.1 | VV93_v1c08160 | VV93_v1c08170 | Alpha/beta hydrolase. | Hypothetical protein. | 0.800 |
AIL69910.1 | rlmM | VV93_v1c08160 | VV93_v1c08180 | Alpha/beta hydrolase. | RNA 2'-O-ribose methyltransferase; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. | 0.800 |
AIL69911.1 | AIL69909.1 | VV93_v1c08170 | VV93_v1c08150 | Hypothetical protein. | DNA-binding transcriptional activator GcvA; Belongs to the LysR transcriptional regulatory family. | 0.802 |
AIL69911.1 | AIL69910.1 | VV93_v1c08170 | VV93_v1c08160 | Hypothetical protein. | Alpha/beta hydrolase. | 0.800 |
AIL69911.1 | rlmM | VV93_v1c08170 | VV93_v1c08180 | Hypothetical protein. | RNA 2'-O-ribose methyltransferase; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. | 0.902 |
AIL70178.1 | AIL70277.1 | VV93_v1c10870 | VV93_v1c11870 | Nucleoid-associated protein NdpA. | Hypothetical protein. | 0.625 |
AIL70178.1 | AIL71939.1 | VV93_v1c10870 | VV93_v1c28670 | Nucleoid-associated protein NdpA. | Hypothetical protein. | 0.522 |
AIL70178.1 | nfuA | VV93_v1c10870 | VV93_v1c02090 | Nucleoid-associated protein NdpA. | DNA uptake protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.406 |
AIL70178.1 | rlmM | VV93_v1c10870 | VV93_v1c08180 | Nucleoid-associated protein NdpA. | RNA 2'-O-ribose methyltransferase; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. | 0.665 |
AIL70178.1 | yihI | VV93_v1c10870 | VV93_v1c01770 | Nucleoid-associated protein NdpA. | Aminotransferase; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family. | 0.730 |
AIL70277.1 | AIL70178.1 | VV93_v1c11870 | VV93_v1c10870 | Hypothetical protein. | Nucleoid-associated protein NdpA. | 0.625 |
AIL70277.1 | AIL71939.1 | VV93_v1c11870 | VV93_v1c28670 | Hypothetical protein. | Hypothetical protein. | 0.710 |
AIL70277.1 | mreD | VV93_v1c11870 | VV93_v1c26550 | Hypothetical protein. | Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family. | 0.662 |
AIL70277.1 | nfuA | VV93_v1c11870 | VV93_v1c02090 | Hypothetical protein. | DNA uptake protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.642 |
AIL70277.1 | rlmM | VV93_v1c11870 | VV93_v1c08180 | Hypothetical protein. | RNA 2'-O-ribose methyltransferase; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. | 0.489 |
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