znuC protein (Vibrio vulnificus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

znuC

Zinc import ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family (261 aa)

Predicted Functional Partners:

VV1036

0.999

VV1038

0.997

VV0831

0.975

VV0830

0.942

VV1676

0.663

VV2973

0.652

zntA

0.611

fur

0.556

zntR

0.553

AIL70785.1

0.552

Your Current Organism:

Vibrio vulnificus

NCBI taxonomy Id: 672
Other names: ATCC 27562, BCRC 12905, Beneckea vulnifica, CAIM 610, CCRC 12905, CCUG 13448, CCUG 16394, CIP 75.4, DSM 10143, IFO 15645, JCM 3725, LMG 13545, NBRC 15645, V. vulnificus, Vibrio vulnificus, strain 324

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIL70785.1	znuC	VV93_v1c16970	VV93_v1c09600	annotation not available	Zinc import ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family	0.552
VV0830	VV0831	VV93_v1c07710	VV93_v1c07720	annotation not available	annotation not available	0.997
VV0830	VV1036	VV93_v1c07710	VV93_v1c09590	annotation not available	annotation not available	0.925
VV0830	VV1038	VV93_v1c07710	VV93_v1c09610	annotation not available	annotation not available	0.912
VV0830	znuC	VV93_v1c07710	VV93_v1c09600	annotation not available	Zinc import ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family	0.942
VV0831	VV0830	VV93_v1c07720	VV93_v1c07710	annotation not available	annotation not available	0.997
VV0831	VV1036	VV93_v1c07720	VV93_v1c09590	annotation not available	annotation not available	0.900
VV0831	VV1038	VV93_v1c07720	VV93_v1c09610	annotation not available	annotation not available	0.926
VV0831	znuC	VV93_v1c07720	VV93_v1c09600	annotation not available	Zinc import ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family	0.975
VV1036	VV0830	VV93_v1c09590	VV93_v1c07710	annotation not available	annotation not available	0.925
VV1036	VV0831	VV93_v1c09590	VV93_v1c07720	annotation not available	annotation not available	0.900
VV1036	VV1038	VV93_v1c09590	VV93_v1c09610	annotation not available	annotation not available	0.998
VV1036	VV2973	VV93_v1c09590	VV93_v1c27020	annotation not available	annotation not available	0.621
VV1036	znuC	VV93_v1c09590	VV93_v1c09600	annotation not available	Zinc import ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family	0.999
VV1038	VV0830	VV93_v1c09610	VV93_v1c07710	annotation not available	annotation not available	0.912
VV1038	VV0831	VV93_v1c09610	VV93_v1c07720	annotation not available	annotation not available	0.926
VV1038	VV1036	VV93_v1c09610	VV93_v1c09590	annotation not available	annotation not available	0.998
VV1038	VV2973	VV93_v1c09610	VV93_v1c27020	annotation not available	annotation not available	0.625
VV1038	znuC	VV93_v1c09610	VV93_v1c09600	annotation not available	Zinc import ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family	0.997
VV1676	zntA	VV93_v1c15660	VV93_v1c20860	annotation not available	annotation not available	0.592

page 1 of 2

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About