STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctD
annotation not available (446 aa)
Predicted Functional Partners:
aauS
annotation not available
0.986
VVA1649
annotation not available
0.897
VVA1650
annotation not available
0.833
VVA1479
annotation not available
0.814
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
a tab-delimited file describing the names, domains and annotated functions of the network proteins
Browse interactions in tabular form:
node1
node2
node1 accession
node2 accession
node1 annotation
node2 annotation
score
VV1102
aauS
VV93_v1c10230
VV93_v1c10220
annotation not available
annotation not available
0.599
VV1102
dctD
VV93_v1c10230
VV93_v1c10210
annotation not available
annotation not available
0.599
VV1603
VVA1479
VV93_v1c14790
VV93_v1c43780
annotation not available
annotation not available
0.496
VV1603
VVA1650
VV93_v1c14790
VV93_v1c45140
annotation not available
annotation not available
0.420
VV1603
dctD
VV93_v1c14790
VV93_v1c10210
annotation not available
annotation not available
0.493
VVA0612
VVA1479
VV93_v1c36130
VV93_v1c43780
annotation not available
annotation not available
0.420
VVA0612
VVA1650
VV93_v1c36130
VV93_v1c45140
annotation not available
annotation not available
0.420
VVA0612
dctD
VV93_v1c36130
VV93_v1c10210
annotation not available
annotation not available
0.420
VVA0716
VVA1479
VV93_v1c37120
VV93_v1c43780
annotation not available
annotation not available
0.482
VVA0716
VVA1650
VV93_v1c37120
VV93_v1c45140
annotation not available
annotation not available
0.482
VVA0716
dctD
VV93_v1c37120
VV93_v1c10210
annotation not available
annotation not available
0.491
VVA1479
VV1603
VV93_v1c43780
VV93_v1c14790
annotation not available
annotation not available
0.496
VVA1479
VVA0612
VV93_v1c43780
VV93_v1c36130
annotation not available
annotation not available
0.420
VVA1479
VVA0716
VV93_v1c43780
VV93_v1c37120
annotation not available
annotation not available
0.482
VVA1479
VVA1649
VV93_v1c43780
VV93_v1c45130
annotation not available
annotation not available
0.889
VVA1479
VVA1650
VV93_v1c43780
VV93_v1c45140
annotation not available
annotation not available
0.847
VVA1479
aauS
VV93_v1c43780
VV93_v1c10220
annotation not available
annotation not available
0.880
VVA1479
dctD
VV93_v1c43780
VV93_v1c10210
annotation not available
annotation not available
0.814
VVA1479
glnL
VV93_v1c43780
VV93_v1c01820
annotation not available
annotation not available
0.649
VVA1479
rpoN
VV93_v1c43780
VV93_v1c04160
annotation not available
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
0.761
page 1 of 3
Network Stats
Network Stats analysis is still ongoing, please wait ...
Functional enrichments in your networkNote: some enrichments may be expected here (why?) explain columns
Enrichment analysis is still ongoing, please wait ...
Statistical background
For the above enrichment analysis, the following statistical background is assumed: