dctD protein (Vibrio vulnificus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

dctD

annotation not available (446 aa)

Predicted Functional Partners:

aauS

0.986

VVA1649

0.897

VVA1650

0.833

VVA1479

0.814

rpoN

0.765

glnL

0.653

VV1102

0.599

VV1603

0.493

VVA0716

0.491

VVA0612

0.420

Your Current Organism:

Vibrio vulnificus

NCBI taxonomy Id: 672
Other names: ATCC 27562, BCRC 12905, Beneckea vulnifica, CAIM 610, CCRC 12905, CCUG 13448, CCUG 16394, CIP 75.4, DSM 10143, IFO 15645, JCM 3725, LMG 13545, NBRC 15645, V. vulnificus, Vibrio vulnificus, strain 324

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VV1102	aauS	VV93_v1c10230	VV93_v1c10220	annotation not available	annotation not available	0.599
VV1102	dctD	VV93_v1c10230	VV93_v1c10210	annotation not available	annotation not available	0.599
VV1603	VVA1479	VV93_v1c14790	VV93_v1c43780	annotation not available	annotation not available	0.496
VV1603	VVA1650	VV93_v1c14790	VV93_v1c45140	annotation not available	annotation not available	0.420
VV1603	dctD	VV93_v1c14790	VV93_v1c10210	annotation not available	annotation not available	0.493
VVA0612	VVA1479	VV93_v1c36130	VV93_v1c43780	annotation not available	annotation not available	0.420
VVA0612	VVA1650	VV93_v1c36130	VV93_v1c45140	annotation not available	annotation not available	0.420
VVA0612	dctD	VV93_v1c36130	VV93_v1c10210	annotation not available	annotation not available	0.420
VVA0716	VVA1479	VV93_v1c37120	VV93_v1c43780	annotation not available	annotation not available	0.482
VVA0716	VVA1650	VV93_v1c37120	VV93_v1c45140	annotation not available	annotation not available	0.482
VVA0716	dctD	VV93_v1c37120	VV93_v1c10210	annotation not available	annotation not available	0.491
VVA1479	VV1603	VV93_v1c43780	VV93_v1c14790	annotation not available	annotation not available	0.496
VVA1479	VVA0612	VV93_v1c43780	VV93_v1c36130	annotation not available	annotation not available	0.420
VVA1479	VVA0716	VV93_v1c43780	VV93_v1c37120	annotation not available	annotation not available	0.482
VVA1479	VVA1649	VV93_v1c43780	VV93_v1c45130	annotation not available	annotation not available	0.889
VVA1479	VVA1650	VV93_v1c43780	VV93_v1c45140	annotation not available	annotation not available	0.847
VVA1479	aauS	VV93_v1c43780	VV93_v1c10220	annotation not available	annotation not available	0.880
VVA1479	dctD	VV93_v1c43780	VV93_v1c10210	annotation not available	annotation not available	0.814
VVA1479	glnL	VV93_v1c43780	VV93_v1c01820	annotation not available	annotation not available	0.649
VVA1479	rpoN	VV93_v1c43780	VV93_v1c04160	annotation not available	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	0.761

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About