VV1148 protein (Vibrio vulnificus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VV1148

annotation not available (138 aa)

Predicted Functional Partners:

VVA1534

0.987

VV0427

0.985

VV1150

0.891

guaA

0.595

def1

0.553

def2

0.553

VV3129

0.474

VVA0652

0.451

btuD

0.450

VV1285

0.450

Your Current Organism:

Vibrio vulnificus

NCBI taxonomy Id: 672
Other names: ATCC 27562, BCRC 12905, Beneckea vulnifica, CAIM 610, CCRC 12905, CCUG 13448, CCUG 16394, CIP 75.4, DSM 10143, IFO 15645, JCM 3725, LMG 13545, NBRC 15645, V. vulnificus, Vibrio vulnificus, strain 324

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VV0427	VV1148	VV93_v1c03940	VV93_v1c10660	Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine	annotation not available	0.985
VV1148	VV0427	VV93_v1c10660	VV93_v1c03940	annotation not available	Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine	0.985
VV1148	VV1150	VV93_v1c10660	VV93_v1c10680	annotation not available	annotation not available	0.891
VV1148	VV1285	VV93_v1c10660	VV93_v1c12030	annotation not available	annotation not available	0.450
VV1148	VV3129	VV93_v1c10660	VV93_v1c28470	annotation not available	annotation not available	0.474
VV1148	VVA0652	VV93_v1c10660	VV93_v1c36530	annotation not available	annotation not available	0.451
VV1148	VVA1534	VV93_v1c10660	VV93_v1c44340	annotation not available	Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine	0.987
VV1148	btuD	VV93_v1c10660	VV93_v1c13910	annotation not available	Vitamin B12 import ATP-binding protein BtuD; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system	0.450
VV1148	def1	VV93_v1c10660	VV93_v1c42470	annotation not available	Peptide deformylase 1; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions	0.553
VV1148	def2	VV93_v1c10660	VV93_v1c29470	annotation not available	Peptide deformylase 2; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions	0.553
VV1148	guaA	VV93_v1c10660	VV93_v1c07220	annotation not available	GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP	0.595
VV1150	VV1148	VV93_v1c10680	VV93_v1c10660	annotation not available	annotation not available	0.891
VV1285	VV1148	VV93_v1c12030	VV93_v1c10660	annotation not available	annotation not available	0.450
VV3129	VV1148	VV93_v1c28470	VV93_v1c10660	annotation not available	annotation not available	0.474
VV3129	guaA	VV93_v1c28470	VV93_v1c07220	annotation not available	GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP	0.508
VVA0652	VV1148	VV93_v1c36530	VV93_v1c10660	annotation not available	annotation not available	0.451
VVA1534	VV1148	VV93_v1c44340	VV93_v1c10660	Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine	annotation not available	0.987
btuD	VV1148	VV93_v1c13910	VV93_v1c10660	Vitamin B12 import ATP-binding protein BtuD; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system	annotation not available	0.450
def1	VV1148	VV93_v1c42470	VV93_v1c10660	Peptide deformylase 1; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions	annotation not available	0.553
def2	VV1148	VV93_v1c29470	VV93_v1c10660	Peptide deformylase 2; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions	annotation not available	0.553

page 1 of 2

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2019

Credits

Access

Info

About