Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AIL70167.1 | AIL71303.1 | VV93_v1c10740 | VV93_v1c22250 | Histone deacetylase/AcuC/AphA family protein. | Hypothetical protein. | 0.779 |
AIL70167.1 | AIL71838.1 | VV93_v1c10740 | VV93_v1c27660 | Histone deacetylase/AcuC/AphA family protein. | Hypothetical protein. | 0.815 |
AIL70167.1 | AIL72345.1 | VV93_v1c10740 | VV93_v1c32810 | Histone deacetylase/AcuC/AphA family protein. | AnkB protein. | 0.734 |
AIL70167.1 | atpD | VV93_v1c10740 | VV93_v1c29730 | Histone deacetylase/AcuC/AphA family protein. | F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | 0.625 |
AIL70167.1 | cobB | VV93_v1c10740 | VV93_v1c15810 | Histone deacetylase/AcuC/AphA family protein. | NAD-dependent deacetylase; NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form; Belongs to the sirtuin family. Class III subfamily. | 0.738 |
AIL70167.1 | htpG | VV93_v1c10740 | VV93_v1c09250 | Histone deacetylase/AcuC/AphA family protein. | Heat shock protein 90; Molecular chaperone. Has ATPase activity. | 0.891 |
AIL70167.1 | mutS | VV93_v1c10740 | VV93_v1c25180 | Histone deacetylase/AcuC/AphA family protein. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.583 |
AIL70167.1 | rapA | VV93_v1c10740 | VV93_v1c26480 | Histone deacetylase/AcuC/AphA family protein. | ATP-dependent helicase HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | 0.815 |
AIL70167.1 | topB | VV93_v1c10740 | VV93_v1c10730 | Histone deacetylase/AcuC/AphA family protein. | DNA topoisomerase III; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA su [...] | 0.813 |
AIL70167.1 | udk | VV93_v1c10740 | VV93_v1c11790 | Histone deacetylase/AcuC/AphA family protein. | Uridine kinase. | 0.602 |
AIL71303.1 | AIL70167.1 | VV93_v1c22250 | VV93_v1c10740 | Hypothetical protein. | Histone deacetylase/AcuC/AphA family protein. | 0.779 |
AIL71303.1 | AIL72345.1 | VV93_v1c22250 | VV93_v1c32810 | Hypothetical protein. | AnkB protein. | 0.813 |
AIL71303.1 | cobB | VV93_v1c22250 | VV93_v1c15810 | Hypothetical protein. | NAD-dependent deacetylase; NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form; Belongs to the sirtuin family. Class III subfamily. | 0.474 |
AIL71303.1 | rapA | VV93_v1c22250 | VV93_v1c26480 | Hypothetical protein. | ATP-dependent helicase HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | 0.738 |
AIL71838.1 | AIL70167.1 | VV93_v1c27660 | VV93_v1c10740 | Hypothetical protein. | Histone deacetylase/AcuC/AphA family protein. | 0.815 |
AIL71838.1 | AIL72345.1 | VV93_v1c27660 | VV93_v1c32810 | Hypothetical protein. | AnkB protein. | 0.813 |
AIL71838.1 | cobB | VV93_v1c27660 | VV93_v1c15810 | Hypothetical protein. | NAD-dependent deacetylase; NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form; Belongs to the sirtuin family. Class III subfamily. | 0.474 |
AIL71838.1 | rapA | VV93_v1c27660 | VV93_v1c26480 | Hypothetical protein. | ATP-dependent helicase HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | 0.768 |
AIL72345.1 | AIL70167.1 | VV93_v1c32810 | VV93_v1c10740 | AnkB protein. | Histone deacetylase/AcuC/AphA family protein. | 0.734 |
AIL72345.1 | AIL71303.1 | VV93_v1c32810 | VV93_v1c22250 | AnkB protein. | Hypothetical protein. | 0.813 |
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