nrfB protein (Vibrio vulnificus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

nrfB

annotation not available (195 aa)

Predicted Functional Partners:

nrfC

0.976

nrfD

0.973

nrfE

0.854

VV1256

0.846

VV1255

0.845

nrfG

0.797

nrfA

0.776

VV1374

0.693

napC

0.653

VVA0643

0.653

Your Current Organism:

Vibrio vulnificus

NCBI taxonomy Id: 672
Other names: ATCC 27562, BCRC 12905, Beneckea vulnifica, CAIM 610, CCRC 12905, CCUG 13448, CCUG 16394, CIP 75.4, DSM 10143, IFO 15645, JCM 3725, LMG 13545, NBRC 15645, V. vulnificus, Vibrio vulnificus, strain 324

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VV1255	VV1256	VV93_v1c11740	VV93_v1c11750	annotation not available	Formate-dependent nitrite reductase complex subunit; Possible subunit of a heme lyase	0.979
VV1255	nrfB	VV93_v1c11740	VV93_v1c11700	annotation not available	annotation not available	0.845
VV1255	nrfC	VV93_v1c11740	VV93_v1c11710	annotation not available	annotation not available	0.816
VV1255	nrfD	VV93_v1c11740	VV93_v1c11720	annotation not available	annotation not available	0.816
VV1255	nrfE	VV93_v1c11740	VV93_v1c11730	annotation not available	annotation not available	0.979
VV1256	VV1255	VV93_v1c11750	VV93_v1c11740	Formate-dependent nitrite reductase complex subunit; Possible subunit of a heme lyase	annotation not available	0.979
VV1256	nrfB	VV93_v1c11750	VV93_v1c11700	Formate-dependent nitrite reductase complex subunit; Possible subunit of a heme lyase	annotation not available	0.846
VV1256	nrfC	VV93_v1c11750	VV93_v1c11710	Formate-dependent nitrite reductase complex subunit; Possible subunit of a heme lyase	annotation not available	0.894
VV1256	nrfD	VV93_v1c11750	VV93_v1c11720	Formate-dependent nitrite reductase complex subunit; Possible subunit of a heme lyase	annotation not available	0.923
VV1256	nrfE	VV93_v1c11750	VV93_v1c11730	Formate-dependent nitrite reductase complex subunit; Possible subunit of a heme lyase	annotation not available	0.986
VV1256	nrfG	VV93_v1c11750	VV93_v1c11670	Formate-dependent nitrite reductase complex subunit; Possible subunit of a heme lyase	annotation not available	0.871
VV1374	nrfA	VV93_v1c12870	VV93_v1c11690	annotation not available	Cytochrome c-552; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family	0.731
VV1374	nrfB	VV93_v1c12870	VV93_v1c11700	annotation not available	annotation not available	0.693
VVA0643	nrfA	VV93_v1c36410	VV93_v1c11690	annotation not available	Cytochrome c-552; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family	0.727
VVA0643	nrfB	VV93_v1c36410	VV93_v1c11700	annotation not available	annotation not available	0.653
napC	nrfA	VV93_v1c41210	VV93_v1c11690	annotation not available	Cytochrome c-552; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family	0.676
napC	nrfB	VV93_v1c41210	VV93_v1c11700	annotation not available	annotation not available	0.653
nrfA	VV1374	VV93_v1c11690	VV93_v1c12870	Cytochrome c-552; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family	annotation not available	0.731
nrfA	VVA0643	VV93_v1c11690	VV93_v1c36410	Cytochrome c-552; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family	annotation not available	0.727
nrfA	napC	VV93_v1c11690	VV93_v1c41210	Cytochrome c-552; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family	annotation not available	0.676

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2019

Credits

Access

Info

About