STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
katGCatalase-peroxidase; Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily (723 aa)    
Predicted Functional Partners:
hisC
annotation not available
     
  0.900
VV2096
annotation not available
     
  0.900
VVA0892
annotation not available
     
  0.900
phhA
annotation not available
     
  0.900
VV0709
annotation not available
     
  0.800
VV3248
annotation not available
     
  0.800
oxyR
annotation not available
     
 0.754
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
      
 0.746
rpoS
annotation not available
   
  
 0.645
VV0065
annotation not available
      
 0.633
Your Current Organism:
Vibrio vulnificus
NCBI taxonomy Id: 672
Other names: ATCC 27562, BCRC 12905, Beneckea vulnifica, CAIM 610, CCRC 12905, CCUG 13448, CCUG 16394, CIP 75.4, DSM 10143, IFO 15645, JCM 3725, LMG 13545, NBRC 15645, V. vulnificus, Vibrio vulnificus, strain 324
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