Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but resolution at 400 dpi
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as simple tabular text output:
TSV: tab separated values - can be opened in Excel
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and annotated functions of the network proteins
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AIL69466.1 | VV1929 | VV93_v1c03670 | VV93_v1c16630 | annotation not available | annotation not available | 0.829 |
| AIL69466.1 | rplE | VV93_v1c03670 | VV93_v1c03580 | annotation not available | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs | 0.997 |
| AIL69466.1 | rplN | VV93_v1c03670 | VV93_v1c03560 | annotation not available | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome | 0.990 |
| AIL69466.1 | rplO | VV93_v1c03670 | VV93_v1c03650 | annotation not available | 50S ribosomal protein L15; Binds to the 23S rRNA | 0.995 |
| AIL69466.1 | rplV | VV93_v1c03670 | VV93_v1c03510 | annotation not available | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity) | 0.994 |
| AIL69466.1 | rplX | VV93_v1c03670 | VV93_v1c03570 | annotation not available | 50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit | 0.995 |
| AIL69466.1 | rpmC | VV93_v1c03670 | VV93_v1c03540 | annotation not available | annotation not available | 0.991 |
| AIL69466.1 | rpsC | VV93_v1c03670 | VV93_v1c03520 | annotation not available | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation | 0.995 |
| AIL69466.1 | rpsH | VV93_v1c03670 | VV93_v1c03600 | annotation not available | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit | 0.998 |
| AIL69466.1 | rpsQ | VV93_v1c03670 | VV93_v1c03550 | annotation not available | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5’-end of 16S ribosomal RNA | 0.991 |
| VV1929 | AIL69466.1 | VV93_v1c16630 | VV93_v1c03670 | annotation not available | annotation not available | 0.829 |
| VV1929 | rplE | VV93_v1c16630 | VV93_v1c03580 | annotation not available | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs | 0.657 |
| VV1929 | rplN | VV93_v1c16630 | VV93_v1c03560 | annotation not available | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome | 0.672 |
| VV1929 | rplO | VV93_v1c16630 | VV93_v1c03650 | annotation not available | 50S ribosomal protein L15; Binds to the 23S rRNA | 0.787 |
| VV1929 | rplV | VV93_v1c16630 | VV93_v1c03510 | annotation not available | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity) | 0.738 |
| VV1929 | rplX | VV93_v1c16630 | VV93_v1c03570 | annotation not available | 50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit | 0.745 |
| VV1929 | rpmC | VV93_v1c16630 | VV93_v1c03540 | annotation not available | annotation not available | 0.693 |
| VV1929 | rpsC | VV93_v1c16630 | VV93_v1c03520 | annotation not available | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation | 0.747 |
| VV1929 | rpsH | VV93_v1c16630 | VV93_v1c03600 | annotation not available | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit | 0.727 |
| VV1929 | rpsQ | VV93_v1c16630 | VV93_v1c03550 | annotation not available | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5’-end of 16S ribosomal RNA | 0.675 |
page 1 of 6
