VV1968 protein (Vibrio vulnificus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VV1968

annotation not available (261 aa)

Predicted Functional Partners:

pncA

0.884

pncB

0.718

VVA0938

0.499

AIL70818.1

0.471

VVA1059

0.455

VV1981

0.404

Your Current Organism:

Vibrio vulnificus

NCBI taxonomy Id: 672
Other names: ATCC 27562, BCRC 12905, Beneckea vulnifica, CAIM 610, CCRC 12905, CCUG 13448, CCUG 16394, CIP 75.4, DSM 10143, IFO 15645, JCM 3725, LMG 13545, NBRC 15645, V. vulnificus, Vibrio vulnificus, strain 324

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIL70818.1	VV1968	VV93_v1c17300	VV93_v1c17280	annotation not available	annotation not available	0.471
AIL70818.1	pncB	VV93_v1c17300	VV93_v1c17290	annotation not available	Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP	0.595
VV1968	AIL70818.1	VV93_v1c17280	VV93_v1c17300	annotation not available	annotation not available	0.471
VV1968	VV1981	VV93_v1c17280	VV93_v1c17410	annotation not available	annotation not available	0.404
VV1968	VVA0938	VV93_v1c17280	VV93_v1c38790	annotation not available	annotation not available	0.499
VV1968	VVA1059	VV93_v1c17280	VV93_v1c40020	annotation not available	annotation not available	0.455
VV1968	pncA	VV93_v1c17280	VV93_v1c17270	annotation not available	annotation not available	0.884
VV1968	pncB	VV93_v1c17280	VV93_v1c17290	annotation not available	Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP	0.718
VV1981	VV1968	VV93_v1c17410	VV93_v1c17280	annotation not available	annotation not available	0.404
VV1981	VVA0938	VV93_v1c17410	VV93_v1c38790	annotation not available	annotation not available	0.401
VVA0938	VV1968	VV93_v1c38790	VV93_v1c17280	annotation not available	annotation not available	0.499
VVA0938	VV1981	VV93_v1c38790	VV93_v1c17410	annotation not available	annotation not available	0.401
VVA0938	VVA1059	VV93_v1c38790	VV93_v1c40020	annotation not available	annotation not available	0.650
VVA1059	VV1968	VV93_v1c40020	VV93_v1c17280	annotation not available	annotation not available	0.455
VVA1059	VVA0938	VV93_v1c40020	VV93_v1c38790	annotation not available	annotation not available	0.650
pncA	VV1968	VV93_v1c17270	VV93_v1c17280	annotation not available	annotation not available	0.884
pncA	pncB	VV93_v1c17270	VV93_v1c17290	annotation not available	Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP	0.989
pncB	AIL70818.1	VV93_v1c17290	VV93_v1c17300	Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP	annotation not available	0.595
pncB	VV1968	VV93_v1c17290	VV93_v1c17280	Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP	annotation not available	0.718
pncB	pncA	VV93_v1c17290	VV93_v1c17270	Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP	annotation not available	0.989

Network

Neighborhood

Databases

Cooccurrence

Textmining

Coexpression

Experiments

Fusion

© STRING Consortium 2020

Credits

Access

Info

About