VV1985 protein (Vibrio vulnificus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VV1985

annotation not available (158 aa)

Predicted Functional Partners:

VV0861

0.608

VVA1066

0.542

speA

0.525

VV1987

0.525

VVA1126

0.468

VVA0442

0.455

AIL72239.1

0.434

Your Current Organism:

Vibrio vulnificus

NCBI taxonomy Id: 672
Other names: ATCC 27562, BCRC 12905, Beneckea vulnifica, CAIM 610, CCRC 12905, CCUG 13448, CCUG 16394, CIP 75.4, DSM 10143, IFO 15645, JCM 3725, LMG 13545, NBRC 15645, V. vulnificus, Vibrio vulnificus, strain 324

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIL72239.1	VV1985	VV93_v1c31710	VV93_v1c17460	annotation not available	annotation not available	0.434
VV0861	VV1985	VV93_v1c08000	VV93_v1c17460	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate; In the C-terminal section; belongs to the HTP reductase family	annotation not available	0.608
VV1985	AIL72239.1	VV93_v1c17460	VV93_v1c31710	annotation not available	annotation not available	0.434
VV1985	VV0861	VV93_v1c17460	VV93_v1c08000	annotation not available	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate; In the C-terminal section; belongs to the HTP reductase family	0.608
VV1985	VV1987	VV93_v1c17460	VV93_v1c17480	annotation not available	annotation not available	0.525
VV1985	VVA0442	VV93_v1c17460	VV93_v1c34260	annotation not available	annotation not available	0.455
VV1985	VVA1066	VV93_v1c17460	VV93_v1c40090	annotation not available	annotation not available	0.542
VV1985	VVA1126	VV93_v1c17460	VV93_v1c40650	annotation not available	annotation not available	0.468
VV1985	speA	VV93_v1c17460	VV93_v1c17470	annotation not available	Biosynthetic arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily	0.525
VV1987	VV1985	VV93_v1c17480	VV93_v1c17460	annotation not available	annotation not available	0.525
VV1987	speA	VV93_v1c17480	VV93_v1c17470	annotation not available	Biosynthetic arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily	0.996
VVA0442	VV1985	VV93_v1c34260	VV93_v1c17460	annotation not available	annotation not available	0.455
VVA0442	VVA1066	VV93_v1c34260	VV93_v1c40090	annotation not available	annotation not available	0.555
VVA0442	VVA1126	VV93_v1c34260	VV93_v1c40650	annotation not available	annotation not available	0.537
VVA1066	VV1985	VV93_v1c40090	VV93_v1c17460	annotation not available	annotation not available	0.542
VVA1066	VVA0442	VV93_v1c40090	VV93_v1c34260	annotation not available	annotation not available	0.555
VVA1066	VVA1126	VV93_v1c40090	VV93_v1c40650	annotation not available	annotation not available	0.426
VVA1126	VV1985	VV93_v1c40650	VV93_v1c17460	annotation not available	annotation not available	0.468
VVA1126	VVA0442	VV93_v1c40650	VV93_v1c34260	annotation not available	annotation not available	0.537
VVA1126	VVA1066	VV93_v1c40650	VV93_v1c40090	annotation not available	annotation not available	0.426

page 1 of 2

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2020

Credits

Access

Info

About